BIOVIAScientific Informatics
Sequence Analysis
This course covers the use of the Pipeline Pilot Sequence Analysis Collection and is intended for users already familiar with customizing components and developing custom protocols. Upon completion of the workshop, students will have the ability to modify and create complex sequence analysis protocols utilizing Pipeline Pilot’s wide variety of scientific functionality available in the Sequence Analysis Collection.
- Level
- Fundamental
- Length
- 4 hours
- Product
- Pipeline Pilot
- Format
- Instructor-ledOnsite or Virtual Classroom
Topics covered
- Collection Basics
- Annotations and Features
- Search and Similarity
- Alignments
- BLAST & HMMs
- Entrez and DAS Utilities
- Integration Tools
- 3rd Party Tools
- BioJava
- Perl & BioPerl
Prerequisites
Pipeline Pilot Fundamentals, PilotScript
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